Welcome to ontpipeline’s documentation!

• Get Started
  • Installation
• General Settings
  • Job Name (Optional)
  • Workspace (Required)
  • Barcodes (Optional)
  • Threads (Required)
• Basecalling Settings
  • Flowcell ID (Required)
  • Kit Number (Requied)
  • Barcode kit (Optional)
  • cpu_threads_per_caller (Default)
  • records_per_fastq (Default)
  • recursive (Default)
  • enable_trimming (Default)
• Reads Filter Settings
  • Read Score (Required)
  • Read Length (Required)
  • Head Crop (Required)
  • no_split (Default)
• Assembly Settings
  • Assembler (Required)
• FAQ
  • What bioinformatics tools are used?
  • Where can I find output files?