Reads Filter Settings¶
Read Score (Required)¶
Set a minimum average read quality score to filter the reads.
Note
- Default value: 9.
- If you want to keep all the reads, set the value to 0, or only a postive integer is acceptable.
Read Length (Required)¶
Set a minimum read length to filter reads.
Note
- Default value: 500.
- If you want to keep all the reads, set the value to 0, or only a postive integer is acceptable.
Head Crop (Required)¶
Note
- Default value: 50.
- If you do not want to crop any reads, set the value to 0, or only a postive integer is acceptable.
no_split [1] (Default)¶
Note
- Set value: Split reads when an adapter is found in the middle.
[1] | Porechop https://github.com/rrwick/Porechop |